NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0018249

Scaffold Ga0334995_0018249


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0018249 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6321
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001009Metagenome / Metatranscriptome807Y
F002267Metagenome / Metatranscriptome576Y
F020009Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0018249_1795_2427F001009GAGMASNLNSEFNYRYQVIGSTPWEKIKTLQGFLVGRKRAAVLEECAELKYQAKLEELDHLRSIPAAKHLILNLRAEILELESHLDDQKHAFELNRKEIKILEKLMAELYMEVEPTRLKHEDGTPYTDDEMFEANANYEFTVTVGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLVGLVPNEAVLLTKPDVVGLIGNSTAKLNTLKGISQ
Ga0334995_0018249_2494_2709F020009AGGMIDPANMPAPTAEEIAQARENAFNAERPASWVWNEAAVSYVAPIAIPSDGYPYLWNEATTTWVPFPDYPRE
Ga0334995_0018249_930_1658F002267AGGMPIVIGPGIEIGPGITAERGAVIAANLVYDLDAANYAAMPANGTVAAGTGTTGQRTLTVANAGASISWQAANGGVFRKSNAVGTDVMYGGPNWSTGQSYSVFMAYKLSVTSSGRLLNTQSEASRDWLLGAYNGFVNAFYPNYSVNLPSSGTNAVWNFIWGTWNATTGLGQLYAATSTQPTTTSFTATNLGGGGGANQMRLFSRSGGSEVQTADIAFVKAYDGILTLANVQSLYGEYKARFGY
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